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@ding-lab

Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

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  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 123 54

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 95 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 59 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 45 26

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 42 14

  6. GenomeVIP GenomeVIP Public

    PHP 20 5

Repositories

Showing 10 of 133 repositories
  • mushroom Public

    A computational tool for identification of 3D multi-modal spatial neighborhoods

    ding-lab/mushroom’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jul 2, 2024
  • ST_subclone_publication Public

    Code for spatial subclone paper

    ding-lab/ST_subclone_publication’s past year of commit activity
    R 0 1 0 0 Updated Jun 27, 2024
  • druggability Public
    ding-lab/druggability’s past year of commit activity
    Python 0 0 0 0 Updated Jun 4, 2024
  • CPTAC_PanCan_Signature_analysis Public
    ding-lab/CPTAC_PanCan_Signature_analysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 17, 2024
  • importGDC Public

    Automated download of CPTAC3 data from GDC

    ding-lab/importGDC’s past year of commit activity
    Shell 2 0 0 0 Updated May 16, 2024
  • Intratumor_heterogeneity Public
    ding-lab/Intratumor_heterogeneity’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 15, 2024
  • Immune_snATAC Public
    ding-lab/Immune_snATAC’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 15, 2024
  • mnp_filter Public
    ding-lab/mnp_filter’s past year of commit activity
    Python 0 GPL-3.0 0 1 0 Updated May 15, 2024
  • ASE_analysis Public
    ding-lab/ASE_analysis’s past year of commit activity
    R 0 0 0 0 Updated May 9, 2024
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper’s past year of commit activity
    Perl 14 AGPL-3.0 5 0 0 Updated Apr 25, 2024
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